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CONTACT INFORMATION
University of Applied Sciences Albstadt-Sigmaringen
Life Sciences
Anton-Guenther-Str. 51
D-72488 Sigmaringen
tel: 0049(0)7571-732-8523
email: wegner at fh-albsig dot de
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CURRENT PROJECTS
Modelling and simulating the TGFbeta signalling pathway
NetBuilder' - Beta release (download) - Modeling and simulating genetic regulatory networks
SBGN - The Systems Biology Graphical Notation
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PUBLICATIONS
2009
The Systems Biology Graphical Notation,
Nicolas Le Novère et al., Nature Biotechnology 27, 735 - 741.
Genetic
Algorithms and their Application to in-silico Evolution of Genetic
Regulatory Networks, Knabe, J. F., Wegner, K., Nehaniv, C. L. and Schilstra, M. J., Chapter in Fenyo, D., ed., Topics in Computational Biology, Humana Press, 2009 (accepted).
2008
NETBUILDER’ – Logical Modelling and Simulation of genetic regulatory networks, Katja Wegner, Mark Robinson and Maria J. Schilstra (draft).
2006
Dissertation: Visualisation of biochemical pathways and their simulation results, Logos Verlag.
A model diagram layout extension for SBML, Ralph Gauges, Ursula Rost , Sven Sahle and Katja Wegner, Bioinformatics 22(15):1879-1885.
"The Quantification of Cross-correlations in Complex Spatio-temporal Systems", Markus Müller, Katja Wegner, Ursula Kummer, Gerold Baier, Phys. Rev. E 73, 046106.
2005
"A new dynamical layout algorithm for complex biochemical reaction networks", Katja Wegner and Ursula Kummer, BMC Bioinformatics (Supplementary material).
"SimWiz3D - Visualising biochemical simulation results", Katja Wegner, MediViz 2005 (draft).
2004
"combAlign: A protein sequence comparison algorithm considering recombinations", Katja Wegner, Stephan Jansen, Stefan Wuchty, Ralph Gauges and Ursula Kummer (In Silico Biology).
2001
Diploma Thesis: "Ein Algorithmus zum Vergleich von Proteinsequenzen aufgrund ihrer Domänenzusammensetzung", Fachhochschule Lausitz and the EML Research (pdf - German).
LECTURES
From 2009 Mathematics, Statistics, Systems Biology and Bioinformatics
2008 C++ Programming course (University of Heidelberg)
2008 Java Game Programming (University of Applied Sciences Furtwangen)
2008 Software Project (University of Applied Sciences Stuttgart)
2007 C++ Programming course (University of Heidelberg)
2005 Java course (University of Applied Sciences Furtwangen)
2004 Java course (University of Applied Sciences Furtwangen)
Tutorials
2007 Genetic Algorithms and their Application to the Artificial Evolution of Genetic Regulatory Networks (ICSB 2007, pdf)
BIOGRAPHICAL INFORMATION
since Mar. 2009 - Professor in Bioinformatics and Statistics at the University of Applied Sciences Albstadt-Sigmaringen in Sigmaringen
Mar. 2006 - Feb. 2009 Postdoc at the University of Hertfordshire (Biological and neural computation group, Science and Technology Research Institute, Hatfield, UK)
Nov. 2001 - Feb. 2006 Research assistant at the EML Research (Bioinformatics and Computational Biochemistry, Heidelberg, Germany)
Aug. 2001 Diploma in Computer Science with the direction of medical computer science (Fachhochschule Lausitz, Senftenberg, Germany).
Sep. 1999 - Feb. 2000 Internship at the German Resource Center for Genome Research at the Max Planck Society in Berlin (RZPD).
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